Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs2980729 chr10:135054904 T/C 1.89E-14 295 21.73 17.07 3.33 KM Plot
CESC rs2995296 chr10:135072940 A/G 3.91E-8 291 9.03 23.07 21.4 KM Plot
CESC rs2995297 chr10:135072988 A/T 3.61E-8 292 9.03 21.97 21.4 KM Plot
CESC rs2995306 chr10:135079605 G/C 4.16E-10 298 7.47 21.85 21.23 KM Plot
CESC rs2995314 chr10:135084601 T/C 5.63E-10 294 7.47 21.97 21.4 KM Plot
CESC rs2995317 chr10:135090183 A/G 4.59E-10 296 7.47 21.73 21.4 KM Plot
CESC rs2995326 chr10:135097434 A/G 4.94E-10 295 7.47 20.23 22.12 KM Plot
CESC rs2995329 chr10:135101378 A/G 4.94E-10 293 7.47 20.23 21.4 KM Plot
CESC rs3008307 chr10:135068257 T/C 2.09E-14 294 3.33 18.07 22.4 KM Plot
CESC rs3008309 chr10:135068724 A/G 1.51E-14 299 22.88 18.23 3.33 KM Plot
CESC rs3008315 chr10:135072597 T/C 3.61E-8 292 9.03 21.97 21.4 KM Plot
CESC rs3008318 chr10:135076758 T/C 1.72E-10 296 11.6 21.97 21.23 KM Plot
CESC rs3008321 chr10:135084322 A/G 4.59E-10 296 7.47 21.73 21.4 KM Plot
CESC rs3008325 chr10:135086676 A/G 5.07E-10 295 7.47 21.85 21.4 KM Plot
CESC rs3008328 chr10:135092590 C/G 1.25E-10 299 11.6 20.23 22.12 KM Plot